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DLGAP2-AS1 DLGAP2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100507435, updated on 8-Nov-2023

Summary

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Official Symbol
DLGAP2-AS1provided by HGNC
Official Full Name
DLGAP2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:50467
See related
Ensembl:ENSG00000253267 AllianceGenome:HGNC:50467
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.8) See more
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Genomic context

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Location:
8p23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (1565509..1621664, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (1344387..1400752, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (1513675..1569830, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene DLG associated protein 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1321423-1321923 Neighboring gene keratinocyte proline-rich protein-like Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:1322036-1322849 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1325138-1326080 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:1365595-1365747 Neighboring gene uncharacterized LOC105377775 Neighboring gene uncharacterized LOC105379586 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:1385309-1385823 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:1403885-1405084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1427697-1428250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1449675-1450203 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1455237-1455738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1455739-1456238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1487477-1487978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1487979-1488478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1525979-1526505 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1534609-1535108 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:1552920-1554119 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:1555917-1556470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:1574652-1575623 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:1580608-1581807 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:1585200-1585433 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:1605998-1606719 Neighboring gene uncharacterized LOC124901870 Neighboring gene conserved acetylation island sequence 7 enhancer Neighboring gene DNA fragmentation factor subunit alpha pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103863.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005010, AC126333
    Related
    ENST00000518063.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    1565509..1621664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187565.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    271041..291929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187654.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    175319..231392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187680.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    33081..35050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    1344387..1400752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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