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LINC00427 long intergenic non-protein coding RNA 427 [ Homo sapiens (human) ]

Gene ID: 100507040, updated on 26-Oct-2023

Summary

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Official Symbol
LINC00427provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 427provided by HGNC
Primary source
HGNC:HGNC:42762
See related
Ensembl:ENSG00000236463 AllianceGenome:HGNC:42762
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q12.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (30316370..30319903, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29538839..29542374, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene katanin catalytic subunit A1 like 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:30860016-30860638 Neighboring gene RNA, U6 small nuclear 64, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5229 Neighboring gene peroxiredoxin 2 pseudogene 1 Neighboring gene uncharacterized LOC124903145 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:30912012-30913211 Neighboring gene long intergenic non-protein coding RNA 426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5232 Neighboring gene long intergenic non-protein coding RNA 1058

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186618.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356750
    Related
    ENST00000412722.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    30316370..30319903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    29538839..29542374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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