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ELOA-AS1 ELOA antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506963, updated on 10-Oct-2023

Summary

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Official Symbol
ELOA-AS1provided by HGNC
Official Full Name
ELOA antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:50582
See related
Ensembl:ENSG00000236810 AllianceGenome:HGNC:50582
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCEB3-AS1
Expression
Ubiquitous expression in lung (RPKM 18.7), fat (RPKM 14.4) and 25 other tissues See more
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Genomic context

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Location:
1p36.11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (23760382..23778297, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (23595353..23613262, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (24086872..24104787, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 48 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:24024040-24024661 Neighboring gene ribosomal protein L11 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 419 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 420 Neighboring gene elongin A Neighboring gene Sharpr-MPRA regulatory region 2978 Neighboring gene Sharpr-MPRA regulatory region 12147 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:24103632-24104584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 421 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 422 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:24105838-24107037 Neighboring gene PITH domain containing 1 Neighboring gene uncharacterized LOC105376860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 423 Neighboring gene lysophospholipase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • TCEB3 antisense RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038280.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049675, BG429664
    Related
    ENST00000427796.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    23760382..23778297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    23595353..23613262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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