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PNKDP1 PNKD pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100506715, updated on 10-Oct-2023

Summary

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Official Symbol
PNKDP1provided by HGNC
Official Full Name
PNKD pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:49628
See related
AllianceGenome:HGNC:49628
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See PNKDP1 in Genome Data Viewer
Location:
Xq26.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (131803129..131803756, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (130127355..130127982, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (130937157..130937784, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:130798263-130798901 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21000 Neighboring gene heparin binding growth factor pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29949 Neighboring gene Sharpr-MPRA regulatory region 5272 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:130851242-130851768 Neighboring gene MPRA-validated peak7427 silencer Neighboring gene NANOG hESC enhancer GRCh37_chrX:130854476-130855009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29953 Neighboring gene firre intergenic repeating RNA element Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29954 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29958 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29959 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29962 Neighboring gene Sharpr-MPRA regulatory region 13451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29963 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29964 Neighboring gene Sharpr-MPRA regulatory region 4069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130937096-130937596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130937597-130938097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29965 Neighboring gene Sharpr-MPRA regulatory region 13107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21002 Neighboring gene MAPK regulated corepressor interacting protein 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29967 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130960090-130960590 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:131057048-131058247 Neighboring gene RNA, 5S ribosomal pseudogene 514 Neighboring gene Sharpr-MPRA regulatory region 3545 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:131156878-131157424 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:131157425-131157972 Neighboring gene serine/threonine kinase 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • paroxysmal nonkinesigenic dyskinesia pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030161.3 

    Range
    101..728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    131803129..131803756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    130127355..130127982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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