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HMGB1P40 high mobility group box 1 pseudogene 40 [ Homo sapiens (human) ]

Gene ID: 100506595, updated on 10-Oct-2023

Summary

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Official Symbol
HMGB1P40provided by HGNC
Official Full Name
high mobility group box 1 pseudogene 40provided by HGNC
Primary source
HGNC:HGNC:39187
See related
AllianceGenome:HGNC:39187
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
11p15.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (20574132..20575359)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (20694934..20696167)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (20595678..20596905)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902808 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19926 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19937 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3204 Neighboring gene protein arginine methyltransferase 3 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:20566010-20566716 Neighboring gene uncharacterized LOC105376584 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20020 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20054 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20084 Neighboring gene Sharpr-MPRA regulatory region 9738 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:20631780-20631977 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:20643011-20643512 Neighboring gene solute carrier family 6 member 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:20787638-20787848 Neighboring gene neural EGFL like 1 Neighboring gene uncharacterized LOC105376585 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:20902693-20903205

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article
  2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027946.2 

    Range
    101..1328
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    20574132..20575359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    20694934..20696167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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