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RAB30-DT RAB30 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506233, updated on 10-Oct-2023

Summary

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Official Symbol
RAB30-DTprovided by HGNC
Official Full Name
RAB30 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48672
See related
AllianceGenome:HGNC:48672
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RAB30-AS1
Expression
Ubiquitous expression in fat (RPKM 9.3), testis (RPKM 8.6) and 25 other tissues See more
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Genomic context

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See RAB30-DT in Genome Data Viewer
Location:
11q14.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (83072066..83073712)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (83008524..83010170)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (82783108..82784754)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5337 Neighboring gene ribosomal protein L7a pseudogene 54 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5339 Neighboring gene RAB30, member RAS oncogene family Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5341 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:82756306-82756860 Neighboring gene small nucleolar RNA, H/ACA box 70E Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5342 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5343 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5345 Neighboring gene long intergenic non-protein coding RNA 2951 Neighboring gene cytochrome c oxidase subunit 5B pseudogene 4 Neighboring gene C1D nuclear receptor corepressor pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • RAB30 antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038903.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI628578, BC031316, BU664621

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    83072066..83073712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    83008524..83010170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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