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RNASEH1-DT RNASEH1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506054, updated on 10-Oct-2023

Summary

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Official Symbol
RNASEH1-DTprovided by HGNC
Official Full Name
RNASEH1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:49289
See related
Ensembl:ENSG00000234171 AllianceGenome:HGNC:49289
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNASEH1-AS1
Expression
Ubiquitous expression in brain (RPKM 2.7), fat (RPKM 2.4) and 25 other tissues See more
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Genomic context

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See RNASEH1-DT in Genome Data Viewer
Location:
2p25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (3558386..3561750)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (3580914..3584268)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (3605976..3609340)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:3522968-3523489 Neighboring gene uncharacterized LOC124907725 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:3523490-3524010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15230 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:3583482-3584681 Neighboring gene ribonuclease H1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11114 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11115 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:3607689-3608586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15232 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15233 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:3615875-3616480 Neighboring gene uncharacterized LOC124907726 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:3616481-3617087 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:3617088-3617693 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:3622403-3622978 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:3622979-3623555 Neighboring gene ribosomal protein S7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration. Matsumura K, et al. Oncogene, 2017 Mar 2. PMID 27797375
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • RNASEH1 antisense RNA 1

Clone Names

  • AC108488.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038429.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different splice site, compared to variant 1.
    Source sequence(s)
    AC108488

  2. NR_038430.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC108488
    Related
    ENST00000438436.4

  3. NR_038431.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon, compared to variant 1.
    Source sequence(s)
    AC108488
    Related
    ENST00000426725.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    3558386..3561750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    3580914..3584268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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