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CEBPZOS CEBPZ opposite strand [ Homo sapiens (human) ]

Gene ID: 100505876, updated on 8-Mar-2024

Summary

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Official Symbol
CEBPZOSprovided by HGNC
Official Full Name
CEBPZ opposite strandprovided by HGNC
Primary source
HGNC:HGNC:49288
See related
Ensembl:ENSG00000218739 AllianceGenome:HGNC:49288
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CEBPZ-AS1
Summary
Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal (RPKM 10.4), thyroid (RPKM 9.4) and 25 other tissues See more
Orthologs
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Genomic context

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Location:
2p22.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (37196496..37216193)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (37203587..37223255)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (37423639..37443336)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15580 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11354 Neighboring gene ARL14EP pseudogene 1 Neighboring gene sulfotransferase family 6B member 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:37416294-37416819 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:37416820-37417344 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11355 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:37431745-37432548 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:37432549-37433353 Neighboring gene ribosomal protein L31 pseudogene 16 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:37441863-37443062 Neighboring gene CCAAT enhancer binding protein zeta Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:37453022-37453626 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:37458084-37459283 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 7 Neighboring gene protein kinase D3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15582 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11356 Neighboring gene PRKD3 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging. Hung V, et al. Mol Cell, 2014 Jul 17. PMID 25002142, Free PMC Article
  2. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
  3. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Gordon DE, et al. Science, 2020 Dec 4. PMID 33060197, Free PMC Article
  4. Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. Fasci D, et al. Mol Cell Proteomics, 2018 Oct. PMID 30021884, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein CEBPZOS
Names
CEBPZ antisense RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001322373.2 → NP_001309302.1  protein CEBPZOS

    Status: VALIDATED

    Source sequence(s)
    AC007390
    Consensus CDS
    CCDS82435.1
    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5
    Related
    ENSP00000384813.1, ENST00000406711.5

  2. NM_001322374.2 → NP_001309303.1  protein CEBPZOS

    Status: VALIDATED

    Source sequence(s)
    AC007390
    Consensus CDS
    CCDS82435.1
    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5
    Related
    ENSP00000384331.1, ENST00000402297.6

  3. NM_001322375.2 → NP_001309304.1  protein CEBPZOS

    Status: VALIDATED

    Source sequence(s)
    AC007390
    Consensus CDS
    CCDS82435.1
    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5
    Related
    ENSP00000383895.1, ENST00000392061.6

  4. NM_001322376.2 → NP_001309305.1  protein CEBPZOS

    Status: VALIDATED

    Source sequence(s)
    AC007390
    Consensus CDS
    CCDS82435.1
    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5

RNA

  1. NR_136316.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007390

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    37196496..37216193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017003108.3 → XP_016858597.1  protein CEBPZOS isoform X1

    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5
    Related
    ENSP00000380254.2, ENST00000397064.6

  2. XM_017003107.2 → XP_016858596.1  protein CEBPZOS isoform X1

    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5

  3. XM_017003106.2 → XP_016858595.1  protein CEBPZOS isoform X1

    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5
    Related
    ENSP00000380403.2, ENST00000397226.2

RNA

  1. XR_007068206.1 RNA Sequence

  2. XR_007068208.1 RNA Sequence

  3. XR_007068207.1 RNA Sequence

  4. XR_007068209.1 RNA Sequence

  5. XR_007068210.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    37203587..37223255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054340075.1 → XP_054196050.1  protein CEBPZOS isoform X1

    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5

  2. XM_054340074.1 → XP_054196049.1  protein CEBPZOS isoform X1

    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5

  3. XM_054340073.1 → XP_054196048.1  protein CEBPZOS isoform X1

    UniProtKB/Swiss-Prot
    A8MTT3, A8MUR5

RNA

  1. XR_008486247.1 RNA Sequence

  2. XR_008486244.1 RNA Sequence

  3. XR_008486246.1 RNA Sequence

  4. XR_008486245.1 RNA Sequence

  5. XR_008486248.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8MTT3.2 GenPept UniProtKB/Swiss-Prot:A8MTT3

Gene LinkOut

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