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LINC01898 long intergenic non-protein coding RNA 1898 [ Homo sapiens (human) ]

Gene ID: 100505853, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01898provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1898provided by HGNC
Primary source
HGNC:HGNC:52717
See related
Ensembl:ENSG00000261194 AllianceGenome:HGNC:52717
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
18q23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (75696083..75712403, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (75925454..75941772, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (73408038..73424358, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372201 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:73201370-73202569 Neighboring gene uncharacterized LOC105372202 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:73222091-73222736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73294662-73295162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73295163-73295663 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:73337297-73338496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:73350103-73350680 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:73350681-73351256 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73405045-73405636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73405637-73406228 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:73423789-73424988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73513709-73514215 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:73558425-73559064 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:73559065-73559702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73616131-73616632 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:73649128-73649670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:73650329-73650828 Neighboring gene uncharacterized LOC105372203 Neighboring gene uncharacterized LOC124904339

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134646.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090338, BC037384, DB046018
    Related
    ENST00000564156.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    75696083..75712403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    75925454..75941772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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