U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02053 long intergenic non-protein coding RNA 2053 [ Homo sapiens (human) ]

Gene ID: 100505609, updated on 10-Oct-2023

Summary

Official Symbol
LINC02053provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2053provided by HGNC
Primary source
HGNC:HGNC:52893
See related
Ensembl:ENSG00000241696 AllianceGenome:HGNC:52893
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.2) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC02053 in Genome Data Viewer
Location:
3q26.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (180414173..180422501)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (183216074..183224404)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (180131961..180140289)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20874 Neighboring gene RALBP1 pseudogene 1 Neighboring gene TTC14 divergent transcript Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180234098-180234598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180234599-180235099 Neighboring gene U8 small nucleolar RNA Neighboring gene RNA, U6 small nuclear 486, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132416.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA939063, BC041442, BI830672
    Related
    ENST00000488262.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    180414173..180422501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    183216074..183224404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)