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BANF1P3 BANF1 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100505506, updated on 10-Oct-2023

Summary

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Official Symbol
BANF1P3provided by HGNC
Official Full Name
BANF1 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:43883
See related
AllianceGenome:HGNC:43883
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q37.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (230724769..230725479, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (231207856..231208566, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (231589484..231590194, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268431 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17231 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17232 Neighboring gene RNA, U6 small nuclear 451, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17233 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17234 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17235 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17236 Neighboring gene CRISPRi-validated cis-regulatory element chr2.6880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:231524789-231525345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17241 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:231531133-231531998 Neighboring gene Sharpr-MPRA regulatory region 12127 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17244 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17246 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17247 Neighboring gene formin-like protein 16 Neighboring gene long intergenic non-protein coding RNA 1907 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12412 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:231585879-231586402 Neighboring gene calcium binding protein 39 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17248 Neighboring gene RNA, U6 small nuclear 268, pseudogene Neighboring gene Sharpr-MPRA regulatory region 14077 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:231654665-231655164 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:231657991-231659190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17249 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12413 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:231708391-231709016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:231726605-231727215 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:231728341-231728999 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:231729658-231730316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:231730317-231730973 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:231734265-231734922 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:231734923-231735580 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17251 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12417 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:231742513-231743287 Neighboring gene integral membrane protein 2C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • barrier to autointegration factor 1 pseudogene 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029257.2 

    Range
    101..811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    230724769..230725479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    231207856..231208566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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