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TOX-DT TOX divergent transcript [ Homo sapiens (human) ]

Gene ID: 100505501, updated on 10-Oct-2023

Summary

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Official Symbol
TOX-DTprovided by HGNC
Official Full Name
TOX divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55935
See related
Ensembl:ENSG00000167912
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lymph node (RPKM 3.2), brain (RPKM 2.9) and 19 other tissues See more
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Genomic context

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See TOX-DT in Genome Data Viewer
Location:
8q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (59119210..59123478)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (59540533..59544801)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (60031769..60036037)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:59684732-59685232 Neighboring gene Sharpr-MPRA regulatory region 1495 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:59754041-59755240 Neighboring gene RNA, U4 small nuclear 50, pseudogene Neighboring gene thymocyte selection associated high mobility group box Neighboring gene VISTA enhancer hs1326 Neighboring gene MPRA-validated peak7040 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:59967891-59968391 Neighboring gene NANOG hESC enhancer GRCh37_chr8:59971345-59971881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27415 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:59993837-59994016 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:60021805-60022474 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19221 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:60086437-60087028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27416 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19222 Neighboring gene RNA, 5S ribosomal pseudogene 267

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149030.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087698, AC090152
    Related
    ENST00000665670.2

  2. NR_149031.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087698, AC090152

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    59119210..59123478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    59540533..59544801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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