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2900076A07Rik RIKEN cDNA 2900076A07 gene [ Mus musculus (house mouse) ]

Gene ID: 100504421, updated on 8-Feb-2024

Summary

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Official Symbol
2900076A07Rikprovided by MGI
Official Full Name
RIKEN cDNA 2900076A07 geneprovided by MGI
Primary source
MGI:MGI:1920242
See related
Ensembl:ENSMUSG00000097277 AllianceGenome:MGI:1920242
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
WI1-1616M8.2
Expression
Ubiquitous expression in limb E14.5 (RPKM 12.0), CNS E18 (RPKM 10.5) and 28 other tissues See more
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Genomic context

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Location:
7 D3; 7 45.71 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (81173298..81181246)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (81523550..81531498)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene cDNA sequence BC048679 Neighboring gene predicted gene, 45991 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:88668387-88668540 Neighboring gene microRNA 1839 Neighboring gene fibronectin type III and SPRY domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_19369 Neighboring gene STARR-positive B cell enhancer mm9_chr7:88715937-88716238 Neighboring gene WAS protein homolog associated with actin, golgi membranes and microtubules

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. Nelson PS, et al. Nucleic Acids Res, 2002 Jan 1. PMID 11752298, Free PMC Article
  2. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  3. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  4. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  5. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045299.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167122
    Related
    ENSMUST00000181492.3

  2. NR_160675.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167122
    Related
    ENSMUST00000180879.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    81173298..81181246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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