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C130021I20Rik Riken cDNA C130021I20 gene [ Mus musculus (house mouse) ]

Gene ID: 100504399, updated on 8-Feb-2024

Summary

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Official Symbol
C130021I20Rikprovided by MGI
Official Full Name
Riken cDNA C130021I20 geneprovided by MGI
Primary source
MGI:MGI:3639863
See related
AllianceGenome:MGI:3639863
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in autopod skin and central nervous system. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in limb E14.5 (RPKM 32.4), mammary gland adult (RPKM 10.0) and 4 other tissues See more
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Genomic context

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See C130021I20Rik in Genome Data Viewer
Location:
2 B; 2 22.5 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (33531205..33535675)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (33641193..33645663)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 39789 Neighboring gene LIM homeobox transcription factor 1 beta Neighboring gene predicted gene, 39790 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:33544353-33544554 Neighboring gene RIKEN cDNA 9430024E24 gene Neighboring gene predicted gene, 52507 Neighboring gene multivesicular body subunit 12B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Analysis of the dynamics of limb transcriptomes during mouse development. Gyurján I, et al. BMC Dev Biol, 2011 Jul 29. PMID 21801425, Free PMC Article
  2. Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/B-catenin signaling activator R-spondin 2. Hoekstra EJ, et al. PLoS One, 2013. PMID 24066094, Free PMC Article
  3. Molecular mapping of developing dorsal horn-enriched genes by microarray and dorsal/ventral subtractive screening. Li MZ, et al. Dev Biol, 2006 Apr 15. PMID 16516881
  4. Global gene expression analysis of murine limb development. Taher L, et al. PLoS One, 2011. PMID 22174793, Free PMC Article
  5. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046275.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK147796, AL929212, CB526918

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    33531205..33535675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177842.2: Suppressed sequence

    Description
    NM_177842.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

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