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Altre aging liver Treg-expressed non-protein coding RNA [ Mus musculus (house mouse) ]

Gene ID: 100504026, updated on 8-Feb-2024

Summary

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Official Symbol
Altreprovided by MGI
Official Full Name
aging liver Treg-expressed non-protein coding RNAprovided by MGI
Primary source
MGI:MGI:3801721
See related
Ensembl:ENSMUSG00000086628 AllianceGenome:MGI:3801721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16157
Expression
Biased expression in liver adult (RPKM 1.2), thymus adult (RPKM 0.2) and 2 other tissues See more
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Genomic context

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Location:
7 C; 7 37.49 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (67916087..67926342, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (68266339..68276594, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor I receptor Neighboring gene predicted gene, 51487 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75350823-75351006 Neighboring gene pyroglutamyl-peptidase I-like Neighboring gene STARR-positive B cell enhancer ABC_E8177 Neighboring gene STARR-seq mESC enhancer starr_19114 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75434034-75434217 Neighboring gene family with sequence similarity 169, member B Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75468056-75468239 Neighboring gene predicted gene 16158 Neighboring gene RIKEN cDNA 4933436H12 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A Treg-specific long noncoding RNA maintains immune-metabolic homeostasis in aging liver.
    Title: A T(reg)-specific long noncoding RNA maintains immune-metabolic homeostasis in aging liver.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Clone Names

  • AC125275.1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040340.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC125275, AI526811

  2. NR_040341.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two consecutive exons and includes an alternate exon in the 5' region, compared to variant 1.
    Source sequence(s)
    AK149394
    Related
    ENSMUST00000135564.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    67916087..67926342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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