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Sp3os trans-acting transcription factor 3, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 100503849, updated on 8-Feb-2024

Summary

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Official Symbol
Sp3osprovided by MGI
Official Full Name
trans-acting transcription factor 3, opposite strandprovided by MGI
Primary source
MGI:MGI:1914936
See related
Ensembl:ENSMUSG00000063714 AllianceGenome:MGI:1914936
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700011J10Rik
Expression
Ubiquitous expression in ovary adult (RPKM 6.7), frontal lobe adult (RPKM 5.2) and 27 other tissues See more
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Genomic context

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Location:
2 C3; 2 43.35 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (72809776..72819593)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (72979432..72989249)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 39849 Neighboring gene STARR-seq mESC enhancer starr_04826 Neighboring gene STARR-seq mESC enhancer starr_04827 Neighboring gene heat shock protein 1 (chaperonin 10), pseudogene 5 Neighboring gene STARR-seq mESC enhancer starr_04828 Neighboring gene trans-acting transcription factor 3 Neighboring gene STARR-seq mESC enhancer starr_04829 Neighboring gene STARR-positive B cell enhancer mm9_chr2:72835176-72835477 Neighboring gene STARR-positive B cell enhancer mm9_chr2:72841087-72841388 Neighboring gene STARR-seq mESC enhancer starr_04832 Neighboring gene predicted gene, 39850 Neighboring gene STARR-positive B cell enhancer mm9_chr2:72878181-72878481 Neighboring gene STARR-seq mESC enhancer starr_04835 Neighboring gene Obg-like ATPase 1 Neighboring gene ribosomal protein L17 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
  2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045269.2 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL844840
    Related
    ENSMUST00000123087.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    72809776..72819593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_183265.2: Suppressed sequence

    Description
    NM_183265.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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