U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm16630 predicted gene, 16630 [ Mus musculus (house mouse) ]

Gene ID: 100503622, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Gm16630provided by MGI
Official Full Name
predicted gene, 16630provided by MGI
Primary source
MGI:MGI:4439554
See related
Ensembl:ENSMUSG00000107875 AllianceGenome:MGI:4439554
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm44696
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
6 B2.3; 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (48107840..48372342, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (48130906..48395408, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15788 Neighboring gene zinc finger protein 777 Neighboring gene zinc finger protein 746 Neighboring gene nuclear encoded tRNA cysteine 37 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 10 (anticodon GCA) Neighboring gene predicted gene, 30435 Neighboring gene nuclear encoded tRNA cysteine 13 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 36 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 4 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 38 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 35 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 39 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 40 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 8 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 41 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 34 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 49 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 1 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 33 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 48 (anticodon GCA) Neighboring gene predicted gene, 38802 Neighboring gene nuclear encoded tRNA cysteine 32 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 31 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 15 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 30 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 29 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 42 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 43 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 28 (anticodon GCA) Neighboring gene predicted gene, 30362 Neighboring gene nuclear encoded tRNA cysteine 12 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 50 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 44 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 27 (anticodon GCA) Neighboring gene predicted gene, 22122 Neighboring gene nuclear encoded tRNA cysteine 17 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 6 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 16 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 26 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 7 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 25 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 9 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 45 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 24 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 23 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 22 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 14 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 5 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 21 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 20 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 46 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 11 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 19 (anticodon GCA) Neighboring gene retinol dehydrogenase 11 pseudogene Neighboring gene KRAB-A domain containing 1 Neighboring gene predicted gene, 38803 Neighboring gene predicted gene, 57777 Neighboring gene zinc finger protein 467

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152250.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK158926

  2. NR_152251.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK043339, AK158926, AW488334
    Related
    ENSMUST00000181943.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    48107840..48372342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.