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Fsbp fibrinogen silencer binding protein [ Mus musculus (house mouse) ]

Gene ID: 100503583, updated on 8-Mar-2024

Summary

Official Symbol
Fsbpprovided by MGI
Official Full Name
fibrinogen silencer binding proteinprovided by MGI
Primary source
MGI:MGI:5301008
See related
Ensembl:ENSMUSG00000094595 AllianceGenome:MGI:5301008
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable identical protein binding activity. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human FSBP (fibrinogen silencer binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E11.5 (RPKM 2.1), placenta adult (RPKM 1.3) and 12 other tissues See more
Orthologs
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Genomic context

Location:
4 A1; 4 5.11 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (11579662..11587802)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (11579662..11587802)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E338 Neighboring gene vir like m6A methyltransferase associated Neighboring gene STARR-seq mESC enhancer starr_09600 Neighboring gene STARR-positive B cell enhancer ABC_E4614 Neighboring gene predicted gene, 53245 Neighboring gene predicted gene, 35693 Neighboring gene RAD54 homolog B (S. cerevisiae) Neighboring gene predicted gene 11832 Neighboring gene eukaryotic translation initiation factor pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
fibrinogen silencer-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256142.1NP_001243071.1  fibrinogen silencer-binding protein

    See identical proteins and their annotated locations for NP_001243071.1

    Status: VALIDATED

    Source sequence(s)
    AK053419, AK147819, AL732538, BX527911
    Consensus CDS
    CCDS57263.1
    UniProtKB/Swiss-Prot
    Q8BJX8, Q8BKE5
    Related
    ENSMUSP00000137082.2, ENSMUST00000180239.2
    Conserved Domains (1) summary
    pfam13873
    Location:682
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    11579662..11587802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)