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Platr22 pluripotency associated transcript 22 [ Mus musculus (house mouse) ]

Gene ID: 100503474, updated on 8-Feb-2024

Summary

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Official Symbol
Platr22provided by MGI
Official Full Name
pluripotency associated transcript 22provided by MGI
Primary source
MGI:MGI:4439804
See related
AllianceGenome:MGI:4439804
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16880
Summary
Is active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1 E4; 1 59.95 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (136623949..136653466)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (136696211..136725728)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34056 Neighboring gene predicted gene, 41958 Neighboring gene STARR-seq mESC enhancer starr_02427 Neighboring gene predicted gene, 19705 Neighboring gene STARR-seq mESC enhancer starr_02432 Neighboring gene predicted gene, 24086 Neighboring gene STARR-positive B cell enhancer ABC_E2012 Neighboring gene hydroxymethylbilane synthase pseudogene Neighboring gene macrophage migration inhibitory factor, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency. Yan P, et al. J Mol Cell Biol, 2021 Aug 4. PMID 33049031, Free PMC Article
  2. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency.
    Title: LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037986.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125186

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    136623949..136653466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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