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A930006K02Rik RIKEN cDNA A930006K02 gene [ Mus musculus (house mouse) ]

Gene ID: 100503120, updated on 8-Feb-2024

Summary

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Official Symbol
A930006K02Rikprovided by MGI
Official Full Name
RIKEN cDNA A930006K02 geneprovided by MGI
Primary source
MGI:MGI:1925683
See related
Ensembl:ENSMUSG00000084866 AllianceGenome:MGI:1925683
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in liver E14.5 (RPKM 8.3), liver E14 (RPKM 8.0) and 19 other tissues See more
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Genomic context

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Location:
16 C3.3; 16 52.95 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (91261992..91267011)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (91465104..91470123)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene interleukin 10 receptor, beta Neighboring gene STARR-positive B cell enhancer ABC_E3171 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:91433882-91434035 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:91442739-91442929 Neighboring gene STARR-positive B cell enhancer ABC_E10923 Neighboring gene STARR-positive B cell enhancer ABC_E9937 Neighboring gene STARR-positive B cell enhancer ABC_E10924 Neighboring gene STARR-positive B cell enhancer ABC_E3172 Neighboring gene predicted gene, 46562 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:91470747-91470930 Neighboring gene STARR-seq mESC enhancer starr_41478 Neighboring gene STARR-seq mESC enhancer starr_41479 Neighboring gene interferon (alpha and beta) receptor 1 Neighboring gene STARR-positive B cell enhancer ABC_E5561 Neighboring gene cell division cycle 20 homolog pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_077219.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK020819, AK038602, BY593382
    Related
    ENSMUST00000149172.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    91261992..91267011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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