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Gm15972 predicted gene 15972 [ Mus musculus (house mouse) ]

Gene ID: 100502834, updated on 8-Feb-2024

Summary

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Official Symbol
Gm15972provided by MGI
Official Full Name
predicted gene 15972provided by MGI
Primary source
MGI:MGI:3801965
See related
Ensembl:ENSMUSG00000086287 AllianceGenome:MGI:3801965
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in bladder adult (RPKM 1.8), genital fat pad adult (RPKM 1.2) and 20 other tissues See more
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Genomic context

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Location:
18 A2; 18 12.08 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (23883504..23885362, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (23750447..23752305, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene dystrobrevin alpha Neighboring gene STARR-seq mESC enhancer starr_44038 Neighboring gene STARR-seq mESC enhancer starr_44039 Neighboring gene STARR-seq mESC enhancer starr_44040 Neighboring gene STARR-seq mESC enhancer starr_44041 Neighboring gene STARR-seq mESC enhancer starr_44043 Neighboring gene predicted gene, 47898 Neighboring gene STARR-seq mESC enhancer starr_44045 Neighboring gene STARR-positive B cell enhancer ABC_E5648 Neighboring gene microtubule-associated protein, RP/EB family, member 2 Neighboring gene microRNA 6360 Neighboring gene predicted gene, 23207

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Clone Names

  • AC145084.1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126066.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW124165, BE952893
    Related
    ENSMUST00000132571.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    23883504..23885362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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