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1700007L15Rik RIKEN cDNA 1700007L15 gene [ Mus musculus (house mouse) ]

Gene ID: 100502742, updated on 8-Feb-2024

Summary

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Official Symbol
1700007L15Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700007L15 geneprovided by MGI
Primary source
MGI:MGI:1916581
See related
Ensembl:ENSMUSG00000097318 AllianceGenome:MGI:1916581
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
linc1609; linc-Iqcg
Expression
Biased expression in testis adult (RPKM 13.7), genital fat pad adult (RPKM 1.7) and 9 other tissues See more
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Genomic context

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See 1700007L15Rik in Genome Data Viewer
Location:
16 B3; 16 23.93 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (33200224..33201106, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (33379854..33380736, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40685 Neighboring gene predicted gene, 52274 Neighboring gene sorting nexin 4 Neighboring gene STARR-positive B cell enhancer ABC_E8629 Neighboring gene STARR-seq mESC enhancer starr_40689 Neighboring gene STARR-seq mESC enhancer starr_40691 Neighboring gene STARR-seq mESC enhancer starr_40692 Neighboring gene STARR-seq mESC enhancer starr_40693 Neighboring gene zinc finger protein 148 Neighboring gene STARR-seq mESC enhancer starr_40697 Neighboring gene STARR-seq mESC enhancer starr_40698 Neighboring gene STARR-seq mESC enhancer starr_40700 Neighboring gene solute carrier family 12 (potassium/chloride transporters), member 8 Neighboring gene STARR-seq mESC enhancer starr_40702 Neighboring gene STARR-positive B cell enhancer ABC_E5537 Neighboring gene STARR-seq mESC enhancer starr_40703

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. lincRNAs act in the circuitry controlling pluripotency and differentiation. Guttman M, et al. Nature, 2011 Aug 28. PMID 21874018, Free PMC Article
  2. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  3. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045709.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122247
    Related
    ENSMUST00000231849.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    33200224..33201106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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