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RNY4P16 RNY4 pseudogene 16 [ Homo sapiens (human) ]

Gene ID: 100431173, updated on 10-Oct-2023

Summary

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Official Symbol
RNY4P16provided by HGNC
Official Full Name
RNY4 pseudogene 16provided by HGNC
Primary source
HGNC:HGNC:34066
See related
Ensembl:ENSG00000201638 AllianceGenome:HGNC:34066
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1q42.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (234837973..234838070)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (234228710..234228807)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (234973720..234973817)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234896325-234896904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234896905-234897482 Neighboring gene long intergenic non-protein coding RNA 2961 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:234907153-234908352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2768 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2769 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234912515-234913091 Neighboring gene uncharacterized LOC124904557 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:234915140-234915338 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234915801-234916406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234916407-234917010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234920999-234921744 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234941970-234942552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234942553-234943136 Neighboring gene uncharacterized LOC107985365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234951823-234952324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234952325-234952824 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2771 Neighboring gene Sharpr-MPRA regulatory region 4610 Neighboring gene Sharpr-MPRA regulatory region 12865 Neighboring gene GATA motif-containing MPRA enhancer 94/95 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:235017825-235017961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2772 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:235034177-235035114 Neighboring gene RNA, 7SL, cytoplasmic 668, pseudogene Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:235048721-235049466 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:235049467-235050211 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:235053443-235054122 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:235056123-235056622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2773 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:235067947-235068447 Neighboring gene long intergenic non-protein coding RNA 2971 Neighboring gene lncRNA negative regulator of antiviral signaling

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, Ro-associated Y4 pseudogene 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021236.2 

    Range
    101..198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    234837973..234838070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    234228710..234228807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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