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PIGUP1 phosphatidylinositol glycan anchor biosynthesis class U pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100422342, updated on 10-Oct-2023

Summary

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Official Symbol
PIGUP1provided by HGNC
Official Full Name
phosphatidylinositol glycan anchor biosynthesis class U pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:45158
See related
Ensembl:ENSG00000224437 AllianceGenome:HGNC:45158
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
9q21.12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (70917081..70917515, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (83065716..83066150, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (73531997..73532431, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily M member 3 Neighboring gene uncharacterized LOC107987078 Neighboring gene Sharpr-MPRA regulatory region 13756 Neighboring gene microRNA 204 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:73568858-73570057 Neighboring gene uncharacterized LOC124902180 Neighboring gene NANOG hESC enhancer GRCh37_chr9:73663060-73663561 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:73735345-73736182 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:73785941-73786486 Neighboring gene Sharpr-MPRA regulatory region 9385 Neighboring gene uncharacterized LOC107987079

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023833.3 

    Range
    101..535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    70917081..70917515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    83065716..83066150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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