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CBX3P5 CBX3 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 100421943, updated on 10-Oct-2023

Summary

Official Symbol
CBX3P5provided by HGNC
Official Full Name
CBX3 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:42877
See related
AllianceGenome:HGNC:42877
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
12q22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (95286288..95286944, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (95267059..95267715, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (95680064..95680720, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene peroxiredoxin 6 pseudogene Neighboring gene FYVE, RhoGEF and PH domain containing 6 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:95508516-95509249 Neighboring gene MPRA-validated peak1898 silencer Neighboring gene ribosomal protein L14 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4737 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:95591907-95592408 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:95592409-95592908 Neighboring gene Sharpr-MPRA regulatory region 9597 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6807 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:95610907-95611501 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:95611502-95612097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6809 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:95629839-95630536 Neighboring gene vezatin, adherens junctions transmembrane protein Neighboring gene RNA, U6 small nuclear 808, pseudogene Neighboring gene microRNA 331

Genomic regions, transcripts, and products

General gene information

Other Names

  • chromobox 3 pseudogene 5
  • chromobox homolog 3 (HP1 gamma homolog, Drosophila) pseudogene
  • chromobox homolog 3 pseudogene 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_024039.3 

    Range
    101..757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    95286288..95286944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    95267059..95267715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)