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TGFBR1P1 TGFBR1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100421483, updated on 20-Dec-2023

Summary

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Official Symbol
TGFBR1P1provided by HGNC
Official Full Name
TGFBR1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:56999
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
19p13.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (6553753..6554487, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (6543381..6544115, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (6553764..6554498, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9954 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9955 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9956 Neighboring gene tubulin beta 4A class IVa Neighboring gene CRISPRi-validated cis-regulatory element chr19.1358 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:6506805-6507716 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:6516143-6516683 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13827 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13828 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13830 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13831 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9958 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9959 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:6532416-6532916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:6532917-6533417 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13835 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13836 Neighboring gene TNF superfamily member 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13837 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13838 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13841 Neighboring gene MPRA-validated peak3304 silencer Neighboring gene chloride intracellular channel 4 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:6577143-6577827 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:6579197-6579879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:6585724-6586478 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:6586479-6587231 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13845 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13846 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13847 Neighboring gene CD70 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • transforming growth factor beta receptor 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_024143.1 

    Range
    101..835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    6553753..6554487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    6543381..6544115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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