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GAPDHP57 glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 [ Homo sapiens (human) ]

Gene ID: 100421188, updated on 10-Oct-2023

Summary

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Official Symbol
GAPDHP57provided by HGNC
Official Full Name
glyceraldehyde 3 phosphate dehydrogenase pseudogene 57provided by HGNC
Primary source
HGNC:HGNC:38563
See related
Ensembl:ENSG00000236167 AllianceGenome:HGNC:38563
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2p12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (75455991..75456595, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (75465280..75465884, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (75683117..75683721, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:75608329-75608829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16087 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16088 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16089 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16091 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11680 Neighboring gene small nucleolar RNA U109 Neighboring gene eva-1 homolog A, regulator of programmed cell death Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11681 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:75750198-75751397 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:75755615-75756140 Neighboring gene EVA1A antisense RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023572.1 

    Range
    101..705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    75455991..75456595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    75465280..75465884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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