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TM9SF5P transmembrane 9 superfamily member 5, pseudogene [ Homo sapiens (human) ]

Gene ID: 100420958, updated on 10-Oct-2023

Summary

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Official Symbol
TM9SF5Pprovided by HGNC
Official Full Name
transmembrane 9 superfamily member 5, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:55623
See related
AllianceGenome:HGNC:55623
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See TM9SF5P in Genome Data Viewer
Location:
Xq26.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (136961917..137002495)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (135270672..135309731)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (136044076..136084654)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancers GRCh37_chrX:135961809-135962408 and GRCh37_chrX:135962409-135963007 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30000 Neighboring gene small nucleolar RNA, C/D box 61 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30001 Neighboring gene RNA binding motif protein X-linked Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30003 Neighboring gene ribosomal protein L22 pseudogene 23 Neighboring gene serine/arginine repetitive matrix 1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:136113166-136113710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:136113711-136114254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21033 Neighboring gene G protein-coupled receptor 101 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:136162121-136162622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:136162623-136163122 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:136179005-136179227 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21034 Neighboring gene VISTA enhancer hs755 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:136487294-136487794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:136509052-136509979 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:136509980-136510906 Neighboring gene Rac family small GTPase 1 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • transmembrane 9 superfamily member 2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026893.1 

    Range
    101..40679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    136961917..137002495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    135270672..135309731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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