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SLC44A3P1 SLC44A3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100420669, updated on 10-Oct-2023

Summary

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Official Symbol
SLC44A3P1provided by HGNC
Official Full Name
SLC44A3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:54781
See related
AllianceGenome:HGNC:54781
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q32.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (193256482..193258323)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (193744850..193746691)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (194121207..194123048)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene PCGEM1 prostate-specific transcript Neighboring gene ribosomal protein S17 pseudogene 8 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:193795141-193795642 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:193795643-193796142 Neighboring gene uncharacterized LOC107985969 Neighboring gene MPRA-validated peak3996 silencer Neighboring gene DNAJC17 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:194247569-194248138 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:194444896-194446095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12198 Neighboring gene SEC61G pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • solute carrier family 44 member 3 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023755.1 

    Range
    101..1942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    193256482..193258323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    193744850..193746691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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