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KDM3AP1 KDM3A pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100420666, updated on 10-Oct-2023

Summary

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Official Symbol
KDM3AP1provided by HGNC
Official Full Name
KDM3A pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:54795
See related
AllianceGenome:HGNC:54795
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q32.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (189487217..189487991, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (189976512..189977286, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (190351943..190352717, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene collagen type V alpha 2 chain Neighboring gene keratin 18 pseudogene 19 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:190243866-190244425 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:190291422-190292024 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:190305066-190305764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16849 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16848 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16847 Neighboring gene WD repeat domain 75 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12170 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12171 Neighboring gene solute carrier family 40 member 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16851 Neighboring gene ASNSD1 upstream open reading frame Neighboring gene asparagine synthetase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • lysine demethylase 3A pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023642.2 

    Range
    101..875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    189487217..189487991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    189976512..189977286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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