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VDAC1P13 voltage dependent anion channel 1 pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 100420568, updated on 10-Oct-2023

Summary

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Official Symbol
VDAC1P13provided by HGNC
Official Full Name
voltage dependent anion channel 1 pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:50515
See related
Ensembl:ENSG00000232526 AllianceGenome:HGNC:50515
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2p21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (42463139..42463997, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (42468576..42469434, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (42690279..42691137, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42567158-42568066 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42568067-42568974 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15645 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:42587530-42588274 and GRCh37_chr2:42588275-42589018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15648 Neighboring gene cytochrome c oxidase subunit 7A2 like Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:42597071-42597572 Neighboring gene potassium voltage-gated channel modifier subfamily G member 3 Neighboring gene small nucleolar RNA SNORD75 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42719309-42720066 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42720067-42720824 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11404 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11405 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11406 Neighboring gene Sharpr-MPRA regulatory region 13941 Neighboring gene ribosomal protein S13 pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42752168-42752668 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42752669-42753169 Neighboring gene metastasis associated 1 family member 3 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:42772737-42773623 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42774519-42775024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15650 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11407 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11408 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11410 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42798824-42799350 Neighboring gene uncharacterized LOC105374555 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42833249-42834000

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Utility of syntenic relationships of VDAC1 pseudogenes for not only an understanding of the phylogenetic divergence history of rodents, but also ascertaining possible pseudogene candidates as genuine pseudogenes. Ido Y, et al. Genomics, 2014 Aug. PMID 24858958

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023558.1 

    Range
    101..959
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    42463139..42463997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    42468576..42469434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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