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IRF5P1 interferon regulatory factor 5 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100420406, updated on 10-Oct-2023

Summary

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Official Symbol
IRF5P1provided by HGNC
Official Full Name
interferon regulatory factor 5 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:41981
See related
Ensembl:ENSG00000251347 AllianceGenome:HGNC:41981
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (92972596..92974741)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (94097501..94099646)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (93984824..93986969)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC441369 Neighboring gene uncharacterized LOC124901978 Neighboring gene triple QxxK/R motif containing Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27616 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19356 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:93986327-93986595 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:94050860-94051674 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27617 Neighboring gene microRNA 8084 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:94146448-94147647 Neighboring gene long intergenic non-protein coding RNA 2906 Neighboring gene uncharacterized LOC105375644

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026120.1 

    Range
    101..2246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    92972596..92974741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    94097501..94099646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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