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TPMTP2 thiopurine S-methyltransferase pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 100420393, updated on 10-Oct-2023

Summary

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Official Symbol
TPMTP2provided by HGNC
Official Full Name
thiopurine S-methyltransferase pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:44565
See related
AllianceGenome:HGNC:44565
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3p22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (42145508..42146427, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (42163510..42164429, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (42187000..42187919, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene trafficking kinesin protein 1 Neighboring gene NANOG hESC enhancer GRCh37_chr3:42093014-42093515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19731 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:42103275-42103494 Neighboring gene ribosomal protein L7a pseudogene 83 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:42112363-42113074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19733 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:42139608-42140430 Neighboring gene uncharacterized LOC124906231 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19735 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19738 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:42176265-42176426 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:42193112-42193674 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:42201127-42201726 Neighboring gene Sharpr-MPRA regulatory region 14647 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:42232115-42232615 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19743 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:42254607-42255108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19744 Neighboring gene RNA, U4 small nuclear 78, pseudogene Neighboring gene uncharacterized LOC105377048

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Thiopurine S-methyltransferase pharmacogenetics: variant allele functional and comparative genomics. Salavaggione OE, et al. Pharmacogenet Genomics, 2005 Nov. PMID 16220112

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025569.2 

    Range
    101..1020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    42145508..42146427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    42163510..42164429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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