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RFPL4AP5 ret finger protein like 4A pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 100420058, updated on 10-Oct-2023

Summary

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Official Symbol
RFPL4AP5provided by HGNC
Official Full Name
ret finger protein like 4A pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:45144
See related
Ensembl:ENSG00000248720 AllianceGenome:HGNC:45144
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q24.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (126174186..126175089, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (127301741..127302644, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (127186430..127187333, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 6550 Neighboring gene superoxide dismutase 1 pseudogene 3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:127059506-127060705 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:127105809-127106377 Neighboring gene lysine rich nucleolar protein 1 pseudogene 5 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:127155224-127156423 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:127267275-127267436 Neighboring gene NANOG hESC enhancer GRCh37_chr8:127296381-127296887 Neighboring gene uncharacterized LOC101927657 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:127384477-127385018 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:127412538-127413039 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:127422275-127422836 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:127433559-127434060 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:127445690-127446889 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:127460795-127461604 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:127461605-127462414 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:127462415-127463224 Neighboring gene RNA, U6 small nuclear 869, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026072.1 

    Range
    101..1004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    126174186..126175089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    127301741..127302644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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