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HMGB1P46 high mobility group box 1 pseudogene 46 [ Homo sapiens (human) ]

Gene ID: 100419978, updated on 10-Oct-2023

Summary

Official Symbol
HMGB1P46provided by HGNC
Official Full Name
high mobility group box 1 pseudogene 46provided by HGNC
Primary source
HGNC:HGNC:39279
See related
Ensembl:ENSG00000254146 AllianceGenome:HGNC:39279
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
8q23.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (107173199..107173809, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (108300790..108301400, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (108185427..108186037, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902066 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:107986595-107987142 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:108116572-108117771 Neighboring gene MPRA-validated peak7140 silencer Neighboring gene uncharacterized LOC105375701 Neighboring gene uncharacterized LOC124902067 Neighboring gene MPRA-validated peak7142 silencer Neighboring gene angiopoietin 1 Neighboring gene MPRA-validated peak7143 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:108441063-108441564 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:108441565-108442064 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:108452124-108452320 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:108456962-108457507 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:108457806-108458328 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:108458329-108458849 Neighboring gene MPRA-validated peak7144 silencer Neighboring gene phosphoglycerate mutase 1 pseudogene 13

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026068.1 

    Range
    101..711
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    107173199..107173809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    108300790..108301400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)