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HMGB1P36 high mobility group box 1 pseudogene 36 [ Homo sapiens (human) ]

Gene ID: 100419968, updated on 10-Oct-2023

Summary

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Official Symbol
HMGB1P36provided by HGNC
Official Full Name
high mobility group box 1 pseudogene 36provided by HGNC
Primary source
HGNC:HGNC:39176
See related
Ensembl:ENSG00000243873 AllianceGenome:HGNC:39176
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3p13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (70753854..70754573)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (70790353..70791072)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (70803005..70803724)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377152 Neighboring gene Sharpr-MPRA regulatory region 8579 Neighboring gene Sharpr-MPRA regulatory region 3883 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:70838694-70838912 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:70882268-70882846 Neighboring gene RNA, U6 small nuclear 281, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:70902705-70903904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:70903859-70904359 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:70926235-70926734 Neighboring gene OCT4 hESC enhancer GRCh37_chr3:70976354-70976889 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:70998543-70998739 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:71012492-71013094 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:71025197-71026396 Neighboring gene VISTA enhancer hs864 Neighboring gene VISTA enhancer hs965 Neighboring gene forkhead box P1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:71114251-71114751 Neighboring gene uncharacterized LOC124906247 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:71128185-71128767 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20059

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • high-mobility group box 2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025706.1 

    Range
    101..820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    70753854..70754573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    70790353..70791072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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