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PDLIM1P4 PDZ and LIM domain 1 pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 100419185, updated on 10-Oct-2023

Summary

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Official Symbol
PDLIM1P4provided by HGNC
Official Full Name
PDZ and LIM domain 1 pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:48947
See related
Ensembl:ENSG00000249274 AllianceGenome:HGNC:48947
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q12.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (98782213..98783390)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (101490486..101491657)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (98501057..98502234)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 220 Neighboring gene WW domain containing E3 ubiquitin protein ligase 1 pseudogene 1 Neighboring gene ST3GAL6 antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:98450961-98451709 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:98451710-98452457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14561 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6 Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene RNA, U6 small nuclear 26, pseudogene Neighboring gene uncharacterized LOC124906384

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025722.2 

    Range
    101..1278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    98782213..98783390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    101490486..101491657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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