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NUP35P1 nucleoporin 35 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100419066, updated on 10-Oct-2023

Summary

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Official Symbol
NUP35P1provided by HGNC
Official Full Name
nucleoporin 35 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:52370
See related
AllianceGenome:HGNC:52370
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
10p12.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (24157822..24159343)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (24176355..24177876)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (24446751..24448272)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2218 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2219 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2217 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:23800961-23802160 Neighboring gene uncharacterized LOC105376454 Neighboring gene OTU deubiquitinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3152 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2220 Neighboring gene KIAA1217 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:24113200-24113379 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:24207043-24207938 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:24207939-24208832 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:24385043-24385660 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:24491171-24491936 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:24498253-24499452 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:24503338-24503926 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:24511600-24512328 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:24526677-24527202 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:24581301-24582500 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3156 Neighboring gene microRNA 603 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:24669872-24670068 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:24671977-24673176 Neighboring gene uncharacterized LOC124902395 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:24721337-24722536

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025477.3 

    Range
    101..1622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    24157822..24159343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    24176355..24177876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases