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SNX25P1 sorting nexin 25 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100419028, updated on 10-Oct-2023

Summary

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Official Symbol
SNX25P1provided by HGNC
Official Full Name
sorting nexin 25 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:41509
See related
Ensembl:ENSG00000236809 AllianceGenome:HGNC:41509
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1q32.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (211416961..211417934)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (210662573..210663546)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (211590303..211591276)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904504 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:211550792-211551568 Neighboring gene uncharacterized LOC107985259 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2485 Neighboring gene long intergenic non-protein coding RNA 467 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:211571607-211572350 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:211573836-211574577 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:211612887-211613110 Neighboring gene actin related protein 2/3 complex subunit 3 pseudogene 2 Neighboring gene RD3 regulator of GUCY2D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027204.2 

    Range
    101..1074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    211416961..211417934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    210662573..210663546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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