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PDCL3P6 PDCL3 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 100419023, updated on 10-Oct-2023

Summary

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Official Symbol
PDCL3P6provided by HGNC
Official Full Name
PDCL3 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:44507
See related
Ensembl:ENSG00000224255 AllianceGenome:HGNC:44507
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1p32.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (52179815..52180694)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (52061324..52062203)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (52645487..52646366)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene collagen alpha-2(I) chain-like Neighboring gene zinc finger FYVE-type containing 9 Neighboring gene alcohol dehydrogenase 5 (class III), chi polypeptide pseudogene Neighboring gene TRA2A pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:52647543-52648512 Neighboring gene MPRA-validated peak225 silencer Neighboring gene ribosomal protein L9 pseudogene 12 Neighboring gene MPRA-validated peak226 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr1:52683789-52683961 Neighboring gene DnaJ heat shock protein family (Hsp40) member C19 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • phosducin-like 3 pseudogene 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027092.1 

    Range
    101..980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    52179815..52180694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    52061324..52062203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases