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CCNL2P1 cyclin L2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100418743, updated on 10-Oct-2023

Summary

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Official Symbol
CCNL2P1provided by HGNC
Official Full Name
cyclin L2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:50855
See related
AllianceGenome:HGNC:50855
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CCNL2P1 in Genome Data Viewer
Location:
4p13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (42561880..42562422, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (42535756..42536298, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (42563897..42564439, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8A1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15394 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21517 Neighboring gene Sharpr-MPRA regulatory region 3359 Neighboring gene ribosomal protein S7 pseudogene 7 Neighboring gene uncharacterized LOC124900698 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:42503719-42504219 Neighboring gene NANOG hESC enhancer GRCh37_chr4:42612853-42613397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21518 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21519 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21521 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21522 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21523 Neighboring gene ATP8A1 divergent transcript Neighboring gene uncharacterized LOC105374430

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025094.1 

    Range
    101..643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    42561880..42562422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    42535756..42536298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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