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Nlrp5-ps NLR family, pyrin domain containing 5, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 100417675, updated on 8-Feb-2024

Summary

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Official Symbol
Nlrp5-psprovided by MGI
Official Full Name
NLR family, pyrin domain containing 5, pseudogeneprovided by MGI
Primary source
MGI:MGI:5010941
See related
Ensembl:ENSMUSG00000121301 AllianceGenome:MGI:5010941
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm18756
Expression
Broad expression in limb E14.5 (RPKM 3.9), whole brain E14.5 (RPKM 2.6) and 17 other tissues See more
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Genomic context

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Location:
7 A1; 7 8.24 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (14264579..14356991, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (14530654..14623066, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene oocyte specific homeobox 4, pseudogene 1 Neighboring gene oocyte specific homeobox 4, pseudogene 2 Neighboring gene predicted gene, 38596 Neighboring gene STARR-seq mESC enhancer starr_18102 Neighboring gene oocyte specific homeobox 4, pseudogene 3 Neighboring gene vomeronasal 1 receptor 90 Neighboring gene oocyte specific homeobox 3, pseudogene 7 Neighboring gene oocyte specific homeobox 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045119.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC092752, AK140342

  2. NR_045120.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has alternate exon structure at both its 5' and 3' ends, and it includes an additional internal exon, compared to variant 1.
    Source sequence(s)
    AK016782
    Related
    ENSMUST00000044683.12

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    14264579..14356991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_018985.1: Suppressed sequence

    Description
    NG_018985.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein Strain
Heading Accession and Version

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