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IGHV1OR15-5 immunoglobulin heavy variable 1/OR15-5 (non-functional) [ Homo sapiens (human) ]

Gene ID: 100384884, updated on 10-Oct-2023

Summary

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Official Symbol
IGHV1OR15-5provided by HGNC
Official Full Name
immunoglobulin heavy variable 1/OR15-5 (non-functional)provided by HGNC
Primary source
HGNC:HGNC:5567
See related
IMGT/GENE-DB:IGHV1/OR15-5
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IGHV1OR155
Annotation information
Annotation category: not annotated on reference assembly
Note: This immunoglobulin gene locus is not present in the GRCh38 assembly. It is defined by Z12314.1 and is thought to represent a haplotypic difference with the reference genome. [10 Aug 2016]
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Genomic context

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Location:
15q11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (10477080..10477373)

Chromosome 21 - NC_060945.1Genomic Context describing neighboring genes Neighboring gene protein FRG1B-like Neighboring gene uncharacterized LOC124908167 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:10718741-10719263 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10725560-10726366 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10726367-10727171 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr21:10732737-10733254 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10743796-10744614 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10748804-10749517 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10749518-10750230 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10750231-10750944 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10759655-10760630 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:10765276-10765789 Neighboring gene solute carrier family 25 member 15 pseudogene 4 Neighboring gene transmembrane phosphatase with tensin homology Neighboring gene CYCS pseudogene 41

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060945.1 Chromosome 21 Alternate T2T-CHM13v2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new human immunoglobulin VH family preferentially rearranged in immature B-cell tumours. Humphries CG, et al. Nature, 1988 Feb 4. PMID 3123998
  2. The repertoire of human germline VH sequences reveals about fifty groups of VH segments with different hypervariable loops. Tomlinson IM, et al. J Mol Biol, 1992 Oct 5. PMID 1404388
  3. Human immunoglobulin VH and D segments on chromosomes 15q11.2 and 16p11.2. Tomlinson IM, et al. Hum Mol Genet, 1994 Jun. PMID 7951227

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • immunoglobulin heavy variable 1/OR15-5 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016978.3 

    Range
    1..294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    10477080..10477373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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