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Nkx2-2os NK2 homeobox 2, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 100313531, updated on 8-Mar-2024

Summary

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Official Symbol
Nkx2-2osprovided by MGI
Official Full Name
NK2 homeobox 2, opposite strandprovided by MGI
Primary source
MGI:MGI:3652259
See related
Ensembl:ENSMUSG00000086509 AllianceGenome:MGI:3652259
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm14112; Nkx2-2as; Nkx2.2AS
Summary
Acts upstream of or within positive regulation of gene expression and positive regulation of oligodendrocyte differentiation. Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
2 G2; 2 72.63 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (147026003..147173601)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (147184083..147331681)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene NK2 homeobox 2 Neighboring gene predicted gene, 57697 Neighboring gene predicted gene 14116 Neighboring gene RIKEN cDNA 6430503K07 gene Neighboring gene Nkx2-2 Hedgehog-responsive enhancer Neighboring gene STARR-seq mESC enhancer starr_05959 Neighboring gene predicted gene, 39955 Neighboring gene STARR-seq mESC enhancer starr_05960 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene paired box 1 divergent transcript Neighboring gene paired box 1 Neighboring gene STARR-seq mESC enhancer starr_05961 Neighboring gene predicted gene, 39956

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation. Tochitani S, et al. Biochem Biophys Res Commun, 2008 Aug 8. PMID 18538132
  2. lncRNAdb: a reference database for long noncoding RNAs. Amaral PP, et al. Nucleic Acids Res, 2011 Jan. PMID 21112873, Free PMC Article
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Other Names

  • NK2 transcription factor related, locus 2, antisense

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of oligodendrocyte differentiation IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive regulation of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive regulation of oligodendrocyte differentiation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_030769.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK045921, AL805918
    Related
    ENSMUST00000136998.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    147026003..147173601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases