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Vmn1r238 vomeronasal 1 receptor, 238 [ Mus musculus (house mouse) ]

Gene ID: 100312476, updated on 8-Feb-2024

Summary

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Official Symbol
Vmn1r238provided by MGI
Official Full Name
vomeronasal 1 receptor, 238provided by MGI
Primary source
MGI:MGI:3852494
See related
Ensembl:ENSMUSG00000091539 AllianceGenome:MGI:3852494
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Vmn1r238 in Genome Data Viewer
Location:
18 A1; 18 2.04 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (3122492..3123412, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (3122492..3123412, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_43648 Neighboring gene vomeronasal 1 receptor, pseudogene 151 Neighboring gene STARR-seq mESC enhancer starr_43649 Neighboring gene STARR-seq mESC enhancer starr_43650 Neighboring gene vomeronasal 1 receptor, pseudogene 152 Neighboring gene STARR-seq mESC enhancer starr_43652 Neighboring gene STARR-seq mESC enhancer starr_43653 Neighboring gene STARR-seq mESC enhancer starr_43654 Neighboring gene STARR-seq mESC enhancer starr_43655 Neighboring gene STARR-positive B cell enhancer ABC_E5646 Neighboring gene cAMP responsive element modulator Neighboring gene predicted gene 6225 Neighboring gene cullin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
vomeronasal 1 receptor, 238
Names
vomeronasal 1 receptor Vmn1r238

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001167539.1 → NP_001161011.1  vomeronasal 1 receptor, 238

    Status: PROVISIONAL

    Source sequence(s)
    AC125218
    Consensus CDS
    CCDS50208.1
    UniProtKB/TrEMBL
    E9Q373
    Related
    ENSMUSP00000129804.3, ENSMUST00000165255.3
    Conserved Domains (1) summary
    pfam03402
    Location:44 → 289
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    3122492..3123412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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