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Actc1dt actin, alpha, cardiac muscle 1 divergent transcript [ Mus musculus (house mouse) ]

Gene ID: 100303644, updated on 8-Feb-2024

Summary

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Official Symbol
Actc1dtprovided by MGI
Official Full Name
actin, alpha, cardiac muscle 1 divergent transcriptprovided by MGI
Primary source
MGI:MGI:4844008
See related
Ensembl:ENSMUSG00000092397 AllianceGenome:MGI:4844008
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CPR; C130080G10Rik
Expression
Restricted expression toward heart adult (RPKM 46.9) See more
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Genomic context

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Location:
2 E4; 2 57.55 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (113884877..113891986)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (114054396..114061505)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene gap junction protein, delta 2 opposite strand Neighboring gene gap junction protein, delta 2 Neighboring gene actin, alpha, cardiac muscle 1 Neighboring gene predicted gene, 46757 Neighboring gene predicted gene, 54143 Neighboring gene aquarius Neighboring gene VISTA enhancer mm182 Neighboring gene STARR-positive B cell enhancer mm9_chr2:113971248-113971549 Neighboring gene microRNA 7002

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long Noncoding RNA CPR (Cardiomyocyte Proliferation Regulator) Regulates Cardiomyocyte Proliferation and Cardiac Repair. Ponnusamy M, et al. Circulation, 2019 Jun 4. PMID 30832495
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Potential readthrough

Included gene: Gjd2os

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028422.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133157, AK081828, AK085765
    Related
    ENSMUST00000150005.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    113884877..113891986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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