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LOC100289470 chromosome 5 open reading frame 60-like [ Homo sapiens (human) ]

Gene ID: 100289470, updated on 8-Nov-2023

Summary

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Gene symbol
LOC100289470
Gene description
chromosome 5 open reading frame 60-like
See related
Ensembl:ENSG00000251545
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
5q35.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (179522496..179525174)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (180075096..180077773)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (178949497..178952175)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23749 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178926962-178927462 Neighboring gene uncharacterized LOC100128622 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16729 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:178941125-178941972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178945330-178946105 Neighboring gene uncharacterized LOC128966623 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:178956772-178957378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:178957379-178957984 Neighboring gene uncharacterized LOC105377762 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23750 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178981435-178981935 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:178982640-178982816 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23751 Neighboring gene RUN and FYVE domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178998880-178999380 Neighboring gene peroxiredoxin 2 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171571.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136628
    Related
    ENST00000505650.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    179522496..179525174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_016107298.1 Reference GRCh38.p14 PATCHES

    Range
    286998..289675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    180075096..180077773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_027777.2: Suppressed sequence

    Description
    NG_027777.2: This RefSeq was removed because it is now thought that this gene is not a pseudogene.
Nucleotide Protein
Heading Accession and Version

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