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WASH8P WAS protein family homolog 8, pseudogene [ Homo sapiens (human) ]

Gene ID: 100288778, updated on 8-Nov-2023

Summary

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Official Symbol
WASH8Pprovided by HGNC
Official Full Name
WAS protein family homolog 8, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:53913
See related
Ensembl:ENSG00000226210 AllianceGenome:HGNC:53913
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in spleen (RPKM 32.4), testis (RPKM 31.8) and 25 other tissues See more
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Genomic context

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Location:
12p13.33
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (14477..32015, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (7478..23077, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (73725..91263)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene DEAD/H-box helicase 11 like 8 (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:86703-87203 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:81477-82356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:78811-79310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:78309-78810 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr12:73943-74609 Neighboring gene uncharacterized LOC107987170 Neighboring gene family with sequence similarity 138 member D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • WAS protein family homolog 1 pseudogene
  • WASH complex subunit 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130745.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC215219, AW274219, AW881719, BC063682, BQ447519, CN404396, DA015248, DC319181
    Related
    ENST00000400706.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    14477..32015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003571049.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    4477..22015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    7478..23077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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