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LOC100288656 ankyrin repeat domain 18A pseudogene [ Homo sapiens (human) ]

Gene ID: 100288656, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100288656
Gene description
ankyrin repeat domain 18A pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100288656 in Genome Data Viewer
Location:
5q35.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (178007218..178007508)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (178558544..178558834)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (177434219..177434509)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene SDS3 homolog, SIN3A corepressor complex component pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:177407066-177407810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:177409257-177409821 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:177423395-177423894 Neighboring gene PROP paired-like homeobox 1 Neighboring gene NANOG hESC enhancer GRCh37_chr5:177436962-177437506 Neighboring gene protein FAM153C Neighboring gene DLCR-2B recombination region Neighboring gene ribosomal protein L19 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16708 Neighboring gene uncharacterized LOC124901147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23733

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • ankyrin repeat domain 20 family member A2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027512.1 

    Range
    101..391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    178007218..178007508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    178558544..178558834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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