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LOC100288208 uncharacterized LOC100288208 [ Homo sapiens (human) ]

Gene ID: 100288208, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100288208
Gene description
uncharacterized LOC100288208
See related
Ensembl:ENSG00000177596
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q22.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (74412957..74419115, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (73634933..73641092, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (74987094..74993252, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 12 Neighboring gene uncharacterized LOC105370259 Neighboring gene NANOG hESC enhancer GRCh37_chr13:74875892-74876393 Neighboring gene RNY1 pseudogene 5 Neighboring gene ribosomal protein L21 pseudogene 108 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:75000691-75001255 Neighboring gene long intergenic non-protein coding RNA 381 Neighboring gene uncharacterized LOC107987191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • FLJ35839

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144452.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK093158, AL355390
    Related
    ENST00000325811.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    74412957..74419115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    73634933..73641092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013669.1: Suppressed sequence

    Description
    NM_001013669.1: This RefSeq was permanently suppressed because it represents expressed repetitive sequence (MER52A) and are considered out of scope.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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